Season 2

2006 · 21 episodes

As the Jeffersonian team takes on more complex cases, personal relationships deepen and secrets emerge, testing the bond between science and intuition—and between colleagues.

1The Titan on the TracksA train carrying a popular Senator is derailed by a car positioned on the tracks. Brennan works out why the dead body of a rich businessman was placed in the car, and the search continues for her father. The team has a new boss.
2Mother and Child in the BayWhen the remains of a young pregnant woman and fetus are found in the Delaware Bay and identified as a newlywed who disappeared a year earlier, the investigation is aimed toward her husband, but takes a surprising turn. Booth is upset that his ex-girlfriend is letting their son spend time with her new boyfriend.
3The Boy in the ShroudWhen the body of a young man, who's been missing for nearly three weeks, is discovered, the investigation leads them to his girlfriend, who is a foster child. Bones becomes emotionally involved in the case since, she too, became a foster child after her parents disappeared.
4The Blonde in the GameAfter digging up the skeletal remains of a young girl, the investigation points to a convicted serial killer on death row. The team follows cryptic clues that lead to another body, an accomplice, and a victim who may still be alive.
5The Truth in the LyeThere are two suspects with the same motive when Booth and Brennan investigate the murder of a man found in a bathtub full of chemicals. They soon discover that he had two wives and a girlfriend.
6The Girl in Suite 2103Booth and Brennan investigate a death due to an explosion in a Miami hotel. The clues lead to foreign diplomats with diplomatic immunity.
7The Girl with the CurlThe team investigates the death of a 10-year-old beauty pageant star. The other contestants, their parents, and their siblings all become possible suspects. Hodgins and Angela go on a date that actually goes well, despite what everyone else predicted.
8The Woman in the SandWhen the skeletal remains of a federal prosecutor who disappeared five years earlier are found in the desert outside Las Vegas, the team suspects it to be tied to the mob. Booth and Brennan go undercover as Vegas high-rollers in an attempt to uncover the mystery, Booth risks his life.
9Aliens in a SpaceshipThe bodies of twin boys, kidnapped five years earlier, are discovered. The investigation lead Booth and Brennan to a notorious kidnapper known as the Grave Digger. During the investigation, Brennan and Hodgins become the Grave Digger's next victims.
10The Headless Witch in the WoodsWhile investigating the death of a film student who was working on a documentary about the legend of a headless witch who haunted the woods in the 1700s, Brennan develops a strong bond with the victim's brother.
11Judas on a PoleBooth and Brennan are called to the scene where a man's body was found hung like a scarecrow, gutted, and burned on the roof of a building used by the FBI to hide witnesses.
12The Man in the CellThe notorious serial killer, Howard Epps, sets his prison cell on fire as part of a daring prison escape. Brennan is his target and her entire team is placed in danger.
13The Girl in the GatorBrennan has to work with another agent while Booth needs to see a therapist. The duo investigate the death of a college freshman, who took part in a 'Girls Gone Wild' type of video.
14The Man in the MansionBooth and Brennan investigate the death of Terence Bancroft, one of the Jeffersonian's major donors, found dead at his home. Hodgins' relationship with the wife of the deceased years earlier, compromises the case.
15Bodies in the BookBrennan and Booth have to solve three murders that are identical to the murders in Brennan's new bestselling book.
16The Boneless Bride in the RiverThe team investigate the death of an Asian woman found without any bones left in her body.
17The Priest in the ChurchyardA broken water main uproots multiple coffins in an old graveyard. When the team is brought in to identify the bodies for re-interment, they discover a newer skeleton that should not be in the graveyard, which has not been used for 50 years.
18The Killer in the ConcreteBooth and Brennan investigate the case of a partial skeleton found in cement. Booth thinks a member of a crime family is responsible.
19Spaceman in a CraterBrennan and Booth are called to the scene where a dead man has been found in a crater. The investigation leads them to the National Space Agency.
20The Glowing Bones in the Old Stone HouseThe team investigate a glowing body. Hodgins proposes to Angela -- several times.
21Stargazer in a PuddleWhen Angela draws the face of an old woman to go with the decomposed skeleton of someone much younger, they soon learn the victim had Progeria, an aging disease. Booth and Brennan investigate to discover who would want to kill such a fragile person. Meanwhile, Hodgins and Angela's walk down the aisle doesn't go as planned.

Episodes